Research

Leiden HumAN is active in the academic world and we are very eager to share our research resutls with the public, here you can find the published work for our projects. For project details, you can navigate to the projects tab.

from LU_Human import results

Highlighted

Does transnational contention lead to transnational memory? The online visual memory of the February 2003 anti-Iraq War protests
Does transnational contention lead to transnational memory? The online visual memory of the February 2003 anti-Iraq War protests
Thomas Smits, Ruben Ros
Social Movement Studies   ·   01 Sep 2021   ·   doi:10.1080/14742837.2021.1967736
Building on efforts to connect social movement and memory studies, this article examines if the massive size and transnational nature of the February 2003 anti-war protests resulted in an equally widely shared and transnational form of memory.

All

2023

The Monarch Initiative in 2024: an analytic platform integrating phenotypes, genes and diseases across species
The Monarch Initiative in 2024: an analytic platform integrating phenotypes, genes and diseases across species
Tim E Putman, Kevin Schaper, Nicolas Matentzoglu, Vincent P Rubinetti, Faisal S Alquaddoomi, ..., Damian Smedley, Peter N Robinson, Christopher J Mungall, Melissa A Haendel, Monica C Munoz-Torres
Nucleic Acids Research   ·   24 Nov 2023   ·   doi:10.1093/nar/gkad1082
Integration of 168,000 samples reveals global patterns of the human gut microbiome
Integration of 168,000 samples reveals global patterns of the human gut microbiome
Richard J. Abdill, Samantha P. Graham, Vincent Rubinetti, Frank W. Albert, Casey S. Greene, Sean Davis, Ran Blekhman
Cold Spring Harbor Laboratory   ·   11 Oct 2023   ·   doi:10.1101/2023.10.11.560955
MyGeneset.info: an interactive and programmatic platform for community-curated and user-created collections of genes
MyGeneset.info: an interactive and programmatic platform for community-curated and user-created collections of genes
Ricardo Avila, Vincent Rubinetti, Xinghua Zhou, Dongbo Hu, Zhongchao Qian, Marco Alvarado Cano, Everaldo Rodolpho, Ginger Tsueng, Casey Greene, Chunlei Wu
Nucleic Acids Research   ·   18 Apr 2023   ·   doi:10.1093/nar/gkad289
Hetnet connectivity search provides rapid insights into how two biomedical entities are related
Hetnet connectivity search provides rapid insights into how two biomedical entities are related
Daniel S. Himmelstein, Michael Zietz, Vincent Rubinetti, Kyle Kloster, Benjamin J. Heil, ..., David N. Nicholson, Yun Hao, Blair D. Sullivan, Michael W. Nagle, Casey S. Greene
Cold Spring Harbor Laboratory   ·   07 Jan 2023   ·   doi:10.1101/2023.01.05.522941

2022

Hetnet connectivity search provides rapid insights into how biomedical entities are related
Hetnet connectivity search provides rapid insights into how biomedical entities are related
Daniel S Himmelstein, Michael Zietz, Vincent Rubinetti, Kyle Kloster, Benjamin J Heil, ..., David N Nicholson, Yun Hao, Blair D Sullivan, Michael W Nagle, Casey S Greene
GigaScience   ·   28 Dec 2022   ·   doi:10.1093/gigascience/giad047
MolEvolvR: A web-app for characterizing proteins using molecular evolution and phylogeny
MolEvolvR: A web-app for characterizing proteins using molecular evolution and phylogeny
Jacob D Krol, Joseph T Burke, Samuel Z Chen, Lo M Sosinski, Faisal S Alquaddoomi, ..., Vincent P Rubinetti, Shaddai Amolitos, Kellen M Reason, John B Johnston, Janani Ravi
Cold Spring Harbor Laboratory   ·   22 Feb 2022   ·   doi:10.1101/2022.02.18.461833

2021

Does transnational contention lead to transnational memory? The online visual memory of the February 2003 anti-Iraq War protests
Does transnational contention lead to transnational memory? The online visual memory of the February 2003 anti-Iraq War protests
Thomas Smits, Ruben Ros
Social Movement Studies   ·   01 Sep 2021   ·   doi:10.1080/14742837.2021.1967736
Building on efforts to connect social movement and memory studies, this article examines if the massive size and transnational nature of the February 2003 anti-war protests resulted in an equally widely shared and transnational form of memory.
Dialectology for Computational Linguists
Dialectology for Computational Linguists
Nerbonne J., Heeringa W., Prokic J., Wieling M.
Similar Languages, Varieties, and Dialects   ·   31 Jul 2021   ·   doi:10.1017/9781108565080.007
An overview of computational work in dialectology

2020

Compressing gene expression data using multiple latent space dimensionalities learns complementary biological representations
Compressing gene expression data using multiple latent space dimensionalities learns complementary biological representations
Gregory P. Way, Michael Zietz, Vincent Rubinetti, Daniel S. Himmelstein, Casey S. Greene
Genome Biology   ·   11 May 2020   ·   doi:10.1186/s13059-020-02021-3

2019

Open collaborative writing with Manubot
Open collaborative writing with Manubot
Daniel S. Himmelstein, Vincent Rubinetti, David R. Slochower, Dongbo Hu, Venkat S. Malladi, Casey S. Greene, Anthony Gitter
PLOS Computational Biology   ·   24 Jun 2019   ·   doi:10.1371/journal.pcbi.1007128
Sequential compression of gene expression across dimensionalities and methods reveals no single best method or dimensionality
Sequential compression of gene expression across dimensionalities and methods reveals no single best method or dimensionality
Gregory P. Way, Michael Zietz, Vincent Rubinetti, Daniel S. Himmelstein, Casey S. Greene
Cold Spring Harbor Laboratory   ·   11 Mar 2019   ·   doi:10.1101/573782